PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g17630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family DBB
Protein Properties Length: 320aa    MW: 35220.6 Da    PI: 6.9578
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g17630genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61e-07442537
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 C+ ++++e++ fC+ ++  +C+dC    H+       H
  CA12g17630  4 QCDVCNKNEASVFCTADEAAICDDCDHRVHHVnklaskH 42
                7*************************9997323555555 PP

2zf-B_box27.75.8e-095492238
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                ++++C+ ++e ++ lfC++++  +C++C l +Hk   Ht
  CA12g17630 54 QAPMCDICQERRALLFCQQDRAIMCRECDLPIHKAneHT 92
                7899*****************************878865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.822147IPR000315B-box-type zinc finger
CDDcd000217.98E-8347No hitNo description
PfamPF006438.7E-6443IPR000315B-box-type zinc finger
SMARTSM003366.1E-8447IPR000315B-box-type zinc finger
SMARTSM003362.9E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.18253100IPR000315B-box-type zinc finger
PfamPF006433.1E-75492IPR000315B-box-type zinc finger
CDDcd000213.56E-105692No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKIQCDVCNK NEASVFCTAD EAAICDDCDH RVHHVNKLAS KHQRFSLLQP SPKQAPMCDI  60
CQERRALLFC QQDRAIMCRE CDLPIHKANE HTQKHNRYLL TGIKLSANST VYTSPSQSQS  120
EISSVNSSVS NLKSQDPISK PVSASLSSTM TNTKAAAVAV VESVKVVKER VGGCNSGHLV  180
NAGGNGLTSS ISEYLEMLPG WHVEDFLDCS TPNGFSKNID DGDLLSFWDT DLESQLSSFP  240
PQNVGIWVPQ VPPPPQSKQE TQTQYFPPSN LNFGGQIGLK ESREVTNIKS SRKWMDDNSF  300
AVPQINPSST SFKRSRTVW*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-111HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552101.10.0PREDICTED: B-box zinc finger protein 20-like
SwissprotQ9LQZ76e-83BBX21_ARATH; B-box zinc finger protein 21
TrEMBLK4DGZ50.0K4DGZ5_SOLLC; Uncharacterized protein
STRINGSolyc12g089240.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-76salt tolerance homolog2